Wye misspeling drug naims matturs – Jeffrey K Aronson (with Robin E Ferner)

mispelling

You must misspell drug names when doing a systematic review

1. Introduction

Drug names are difficult to remember, pronounce, and spell.

For example, which of the following is the correct spelling?

One easy way to find out is to enter the name into PubMed. Here’s what I got when I searched for “amitriptylin”:

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The search engine asked me if I meant “amitriptyline”, which is the correct spelling.

But what about those 37 hits that I got by searching for the wrong spelling “amitriptylin”? Well, when I searched for “amitriptylin & amitriptyline” I got the following:

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That gave me only 23 hits, compared with the previous 37; 14 hits were missing. And when I searched for “amitriptylin NOT amitriptyline”, there they were:

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In other words, unless you searched for the misspelling “amitriptylin” as well as the correct spelling “amitriptyline”, you would miss 14 publications.

In order to determine how many papers you would miss if you didn’t enter misspellings when you search for drug names, Robin Ferner and I searched PubMed systematically for misspellings in 30 drug names that are often misspelled on prescription charts (which we called the test set) and 30 randomly chosen control names. The full findings are published in the BMJ, but here is a summary:

So, if you are doing a systematic review that includes drug names, you’d better include misspellings as well as the proper ones. And you’d better include misspellings of all drug names, not just those that are commonly misspelled.

Here I describe how to generate misspellings for which to search.

 

2. Definitions and how drugs are named

First I need to define some terms:

The box below tells you about International Nonproprietary Names and other types of names that drugs have, but you can skip this if you want.

Some drug naming systems

ja1

 

3. How to generate variant spellings

Now I shall describe how to generate variant spellings (i.e. misspellings). There are six basic ways:

3.1. Substitution

In substitution, one letter is put instead of another. The following are substitutions to look for:

3.2. Omission

In omission, letters are left out, often just one, sometimes more. The following are omissions to look for:

Other letters are much less often omitted; for example l was omitted from drug names in only 0.03% of cases and x in 0.0009%.

Deduplication is a special form of omission, dealt with below (§3.5).

3.3. Addition

In addition, letters are inserted somewhere in the name. The following are additions to look for:

Duplication is a special form of addition, dealt with below (§3.5).

3.4. Transposition

In transposition (metathesis), two letters or groups of letters are swopped. The following are examples:

3.5. Duplication and deduplication

In duplication a letter is repeated and in deduplication a duplicated letter is reduced to a single letter. The following are changes to look for:

3.6. Combinations

Any of the above changes can be combined in altering any drug name. The following are examples:

3.6. Examples of how to generate variants systematically

We applied some of these changes to the drug name amitriptyline, as follows:

We tabulated the results:

Numbers of PubMed hits of hidden reference variant spellings* of the standard name amitriptyline

Variant spellings(i to y substitutions and vice versa) No of hits
Spelling with single l Spelling with double ll
Without final e Plus

final e

Without final e Plus

final e

i–i–i 8 8 0 0
i–i–y 14 1 2
i–y–i 4 80 0 1
i–y–y 1 32 0 1
y–i–i 2 10 0 0
y–i–y 1 10 0 0
y–y–i 0 2 0 0
y–y–y 0 0 0 0
Totals 30 142 1 4

* Included one case of the variant “amitiptyline” lacking the r, and one of “amitriptyine” lacking the l. There was no variant in which the final i was replaced by a y.

Amitriptyline, the standard name, gave 8530 hits.

3.7. Searching for standard variants

Although it may seem obvious, for the sake of completeness I include here a reminder to search for names that are standard somewhere, and are not in the INN nomenclature. There are two cases:

3.7.1. Names that are different in different nomenclatures

For example, thiomersal is an INN but the USAN is thimerosal. Here are the current data (searching PubMed on 16 December 2016):

Search term Interpretation Hits
1. thiomersal[tw] INN 251
2. thimerosal[tw] USAN 1700*
3. thiomersal[tw] NOT thimerosal[tw] INN NOT USAN 123
4. thiomersal[tw] AND thimerosal[tw] INN AND USAN 128
5. thimerosal[tw] NOT thiomersal[tw] USAN NOT INN 1572
6. thiomersal[tw] OR thimerosal[tw] INN OR USAN 1823†

*2 = 4 + 5

†6 = 3+4+5

Thus, there are 1572 hidden reference variants that would not be detected by searching only for the INN. You have to search using both spellings connected by OR.

3.7.2. Drugs that have no INNs

For example, acetylsalicylic acid, also known as aspirin, does not have an INN. Here are the current data (searching PubMed on 16 December 2016

Search term Hits
1. aspirin[tw] 59452
2. acetylsalicylic acid[tw] 8809*
3. aspirin[tw] NOT acetylsalicylic acid [tw] 53134
4. aspirin[tw] AND acetylsalicylic acid [tw] 6318
5. acetylsalicylic acid [tw] NOT aspirin[tw] 2491
6. aspirin[tw] OR acetylsalicylic acid [tw] 61943†

*2 = 4 + 5

†6 = 3+4+5

Again, you have to search using both spellings connected by OR to find the complete set and also search for misspellings (e.g. asprin, which gives 14 hidden reference variants).

3.8. Searching databases other than PubMed

Other databases pose similar problems to those encountered in PubMed. Here are some notes on Medline.

Medline allows users to search for words that are spelt with alternative letters, using the hash key # as a wild card. For example, a search for “amitriptyline.af.” yields 8092 hits. Searching for “am#tr#pt#line.af.” uncovers variant spellings with i to y substitutions (and vice versa) in amitriptyline, revealing 123 hidden reference variants.

Truncation is also possible. In Medline, truncating amitriptyline at the letter l and using wild cards (“am#tr#pt#l*.af.”) uncovers variants of the last few letters (for example, ending in “-lin,” “-line,” “-llin,” or “-lline”) without sacrificing specificity, and gives further hits.

However, this does not exhaust all variant forms. For example, the hidden reference variant “amitiptyline”, generated by omission of the letter r, was missed. Other errors, such as transpositions and some additions, will also be missed.

The results obtained by truncation may also be limited if an error occurs early in a name. For example, searching for the variant” manitol” instead of “mannitol” yields 58 hidden variants in PubMed and Medline. However, truncating at man* yields far too many hits for a simple analysis, since so many other words begin with ma- (21975 hits in Medline for mannitol and 576489 for mann*).

3.9. Searching for brand names

We have not covered brand names, but this is a reminder to search for those too. For example, searching PubMed for Lasix[tw] NOT (furosemide[tw] OR frusemide[tw]) yields 80 hidden reference variants.

3.10. Examples of variants for which to search

The following table includes variants that we have already found and others that might be found, but which at the time of writing do not have hidden variants. Information about possible additions is welcome.

Standard name (INN) Variants Hidden reference variants (16/12/16)
amitriptyline amitiptyline, amitriptilin, amitriptiline, amitriptillin, amitriptilline, amitriptyine, amitriptylin, amitriptyllin, amitriptylline, amitryptilin, amitryptiline, amitryptillin, amitryptilline, amitryptylin, amitryptyline, amitryptyllin, amitryptylline, amytriptilin, amytriptiline, amytriptillin, amytriptilline, amytriptylin, amytriptylin, amytriptyline, amytriptyline, amytriptyllin, amytriptyllin, amytriptylline, amytriptylline, amytryptilin, amytryptiline, amytryptillin, amytryptilline 178
amoxicillin amoxicylin, amoxicyline, amoxicyllin, amoxicylline, amoxycilin, amoxyciline, amoxycillin, amoxycilline, amoxycylin, amoxycyline, amoxycyllin, amoxycylline 1166
azathioprine azathiaprin, azathiaprine, azathioprin, azothiaprine, azothioprin, azothioprine 131
capecitabine capacitabine, capcitabine, capecitabene, capecitabin, capecitibine 20
carbamazepine cabamazepine, carbamazapine, carbamazepin, carbamazipine, carbamezepine, carbazepine, carbemazepine 89
ciprofloxacin ciprafloxacin, ciprofloksacin, ciprofloxacine, ciprofloxacyn, ciprofloxasin, ciprofloxicin, cirpofloxacin, cyprofloxacin 121
clotrimazole clotimazole, clotrimasole, clotrimazol, clotrimoxazole, cotrimazole, cotrimazole 45
cotrimoxazole clotimazole, clotrimasole, clotrimazol, clotrimazole, clotrimoxazole, cotrimazole 2719
dipyridamole dipiridamol, dipiridamole, dipirydamol, dipirydamole, dipyramidol, dipyramidole, dipyridamol, dypiridamol, dypiridamol, dypiridamole, dypirydamol, dypyridamole 144
fidaxomicin fidaxomycin, fidoxamicin, fidoxamycin 6
filgrastim filgastrim, filgrastime 20
fosfomycin fosfomicin, fosfomicine, fosfomycine, fosphomycin, phosfomicin, phosfomicine, phosfomycin, phosfomycine, phosphomicin, phosphomicine, phosphomycin, phosphomycine 80
furosemide fruosemide, frusamide, frusemide, furosamide, furosemid, furosmide, fursemid, fursemide 46
gentamicin gentamicine, gentamicyn, gentamycin, gentamycine, gentamycyn, gentimicin, gentimicine, gentimicyn, gentimicyn, gentimycin, gentimycine, gentimycyn 2102
goserelin gosereline, goserilin, goseriline 10
granisetron granisetrone, granisteron, granisterone, granysetron, granysetrone, granysteron, granysterone 4
ipratropium ipatropium, ipratropium, ipetropium, ipretopium, ipitropium, ipritopium 10
lamotrigine lamotragene, lamotragin, lamotragine, lemotragin, lemotragine, lemotrigin, lemotrigine, lymotragin, lymotragine, lymotrigin, lymotrigine 3
levetiracetam levatiracetam, levetirecetam, levetirecetame, levetiracetem, levetyracetam, leviteracetam, levitiracetam, levotiracetam 20
mirtazapine mirtazapin, mirtazepin, mirtazepine, mirtazipin, mirtazipine, mirtazpine, mirtazypin, mirtazypine 35
mycophenolate mycofenalat, mycofenalate, micofenolat, micofenolate, micophenolat, micophenolate, mycofenolat, mycofenolate, mycophenalat, mycophenalate, mycophenolat, mycophenolate 1
netilmicin metilmicin, metilmicine, metilmicyn, metilmycin, metilmycine, metilmycyn, metylmicin, metylmicine, metylmicyn, metylmycin, metylmycine, metylmycyn, netilmicine, netilmicyn, netilmycin, netilmycine, netilmycyn, netylmicin, netylmicine, netylmicyn, netylmycin, netylmycine, netylmycyn 60
nortriptyline nortiptylin, nortiptylin, nortiptyline, nortiptyllin, nortiptyllin, nortiptylline, nortriptilin, nortriptiline, nortriptillin, nortriptilline, nortriptylin, nortriptylin, nortriptyllin, nortriptylline, nortryptilin, nortryptiline, nortryptillin, nortryptilline, nortryptylin, nortryptyline, nortryptyllin, nortryptylline, notiptylin, notiptyline, notiptyllin, notiptylline, notriptylin, notriptylin, notriptyline, notriptyllin, notriptyllin, notriptylline 38
opioid opiod, opoid 65
pentoxifylline pentoxifilin, pentoxifiline, pentoxifillin, pentoxifilline, pentoxifylin, pentoxifyline, pentoxifyllin, pentoxiphilin, pentoxiphiline, pentoxiphillin, pentoxiphilline, pentoxiphylin, pentoxiphyline, pentoxiphyllin, pentoxiphylline, pentoxyfilin, pentoxyfiline, pentoxyfillin, pentoxyfilline, pentoxyfylin, pentoxyfyline, pentoxyfyllin, pentoxyfylline, pentoxyphilin, pentoxyphiline, pentoxyphillin, pentoxyphilline, pentoxyphylin, pentoxyphyline, pentoxyphyllin, pentoxyphylline 192
phenytoin fenitoin, fenitoine, fenytoin, fenytoine, phenytion, phenitoin, phenitoine, phenytoine 27
propranolol popranolol, popranolole, propanalol, propanalole, propanolol, propranolole 252
sertraline sertalin, sertaline, sertralin, setralin, setraline 14
trazodone tradozon, tradozone, trazadon, trazadone, trazodon 32
venlafaxine vanlafaxin, vanlafaxine, venlafaxin, venalfaxin, venalfaxine 12
acetylcysteine acetlycystein, acetlycysteine, acetycystein, acetycysteine, acetylcisteine, acetylcistein, acetylcistin, acetylcistine, acetylcystein, acetylcystin, acetylcystine 121
capsaicin capsacin, capsacine, capsaicine, capsaisin, capsaisine, capsicain, capsicaine, capsicin, capsicine, caspaicin, caspacin, caspacine, caspaicine, caspaisin, caspaisine, caspicain, caspicaine, caspicin, caspicine 21
chloroquine chloraquin, chloraquine, chloroquin, cloroquin, cloroquine, chlorokin, chlorokine, chlorquin, chlorquine, kloroquin, kloroquine 55
domperidone dompederon, dompederone, domperadon, domperadone, domperedon, domperedone, domperidin, domperidine, domperidon, domperodon, domperodone, donperidon, donperidone, doperedon, doperedone 12
doxepin doksapin, doksapine, doksepin, doksepine, doxapin, doxapine, doxepen, doxepene, doxepine, doxpin, doxpine 54
fludarabine fludarabin, fludarebin, fludarebine, fludaribin, fludaribine, fluodarabin, fluodarabine, fudarabin, fudabarine, fudarebin, fudarebine, fudaribin, fudaribine, fuodarabin, fuodarabine, fudabarine 36
fluocinolone flosinolon, flosinolone, floucinolon, floucinolone, floucynilon, floucynilone, flousinolon, flousinolone, flucinolon, flucinolone, fluocinalon, fluocinalone, fluocinilon, fluocinilone, fluocinolon, fluosinolon, fluosinolone, fluosynolon, fluosynolone, flusinolon, flusinolone 4
hydrocortisone hidrocortason, hidrocortasone, hidrocorteson, hidrocortesone, hidrocortison, hidrocortisone, hidrocortyson, hidrocortysone, hydrecortison, hydrecortisone, hydrocortason, hydrocortasone, hydrocorteson, hydrocortesone, hydrocortison, hydrocortyson, hydrocortysone 12
lopinavir lopinavire, lopinevir, lopinevire, lopinivir, lopinivire, lopinovir, lopinovire, lopynavir, lopynavire, lovinipir, lovinipire, olpinavir, olpinavire, olpynavir, olpynavire 2
mannitol manatol, manatole, manetol, manetole, manitol, manitole, mannatol, mannatole, mannetol, mannetole, mannotol, mannotole, manotol, manotole 58
melatonin malatonin, malatonine, melatonine, melatonnin, melatonnine, meletonin, meletonine, melitonin, melitonine, mellatonin, mellatonine 17
midazolam medazalam, medazalame, medazolam, medazolame, midazalam, midazalame, midazolame, midazolan, nidazolam, nidazolame 11
minoxidil manoxidil, manoxidile, menoxidil, menoxidile, minoksidil, minoksidile, minoxadil, minoxadile, minoxedil, minoxedile, minoxidil, minoxidile, minoxidile, minoxidill, minoxidille, minoxidyl, minoxidyle, minoxodil, minoxodile, minoxydyl, minoxydyle, mynoxidil, mynoxidile, mynoxidyl, mynoxidyle, mynoxydil, mynoxydile, mynoxydyl, mynoxydyle 1
naloxone maloxon, maloxone, nalloxon, nalloxone, nalokson, naloksone, naloxen, naloxene, naloxin, naloxine, naloxon, neloxon, neloxone, niloxon, niloxone, noloxon, noloxone 32
olanzapine olanapin, olanapine, olanzapin, olanzepin, olanzepine, olanzipine, olenzapin, olenzapine, ollanzapin, ollanzapine, olapazin, olapazine 29
oxycodone oksicodon, oksicodone, oxecodon, oxecodone, oxicodon, oxicodone, oxycodon, oxydocon, oxydocone 3
oxytetracycline oxitetraciclin, oxitetracicline, oxitetracyclin, oxitetracycline, oxytetracyclin, oxytetracycline, oxytetraciclin, oxytetracicline, oxitetracilin, oxitetracicine, oxitetracylin, oxitetracyline, oxytetracylin, oxytetracyline, oxytetracilin, oxytetraciline, oxitetracicin, oxitetracicine, oxitetracycin, oxitetracycine, oxytetracycin, oxytetracycine, oxytetracicin, oxytetracicine 43
paracetamol paracetamole, paracettamol, paracettamole, paracetemol, paracetemole, paracetimol, paracetimole, parecetamol, parecetemole, parecetemole, paracitamol, paracitamole, paricetimol, paricetimole, parasetamole, parasettamol, parasettamole, parasetemol, parasetemole, parasetimol, parasetimole, paresetamol, paresetemole, paresetemole, parasitamol, parasitamole, parisetimol, parisetimole, rapacetamol, rapacetamole, rapacettamol, rapacettamole, rapacetemol, rapacetemole, rapacetimol, rapacetimole, rapecetamol, rapecetemole, rapecetemole, rapacitamol, rapacitamole, rapicetimol, rapicetimole 17
penicillin nepicillin, nepicilline, nepicyllin, nepicylline, panicillin, panicilline, panicyllin, panicylline, penacillin, penacilline, penacyllin, penacylline, penecillin, penecilline, penecyllin, penecylline, penicilin, peniciline, penicilline, penicylin, penicyline, penicylline, penisillin, penisilline, penisyllin, penisylline 64
perphenazine perfenazin, perfenazine, perphenazin, perphenyzin, perphenyzine, prephenazin, prephenazine 7
prednisolone pednisolon, pednisolone, prednisalon, prednisalone, predniselon, predniselone, prednisolin, prednisoline, prednisollon, prednisollone, prednisolone, prednysolon, prednysolone, prendisolon 3
pyridoxine piridoxin, piridoxine, pirydoxin, pirydoxine, pyriddoxin, pyriddoxine, pyridoxin, pyrrhidoxin, pyrrhidoxine, pyrridoxin, pyrridoxine, pyrydoxin, pyrydoxine 37
tacrolimus tacrolymus, tarcolimus, tarcolymus, tecrolimus, tecrolymus, ticrolimus, ticrolymus 3
testosterone testasterone, testesterone, testisterone, testostarone, testosteron, testostirone, testasteron, testesteroe, testisteroe, testostaron, testostiron 28
treosulfan treosulfam, treosulfam, treosulfame, treosulfan, treosulfan, treosulfane, treosulphan, treosulphane, triosulfan, triosulfane, trosulfan , trosulfane 11
729,306 hits 8323 hits (1.14%)